Sysrecon: Systematical Metabolic Reconstruction
In the past decade, genome-scale metabolic reconstructions have widely been
used to comprehend the systems biology of metabolic pathways within an organism.
Different GSMs are constructed using various techniques that
require distinct steps, but the input data, information conversion and software tools
are neither concisely defined nor mathematically or programmatically formulated
in a context-specific manner.The tool that quantitatively and qualitatively specifies
each reconstruction steps and can generate a template list of reconstruction steps dynamically
selected from a reconstruction step reservoir, constructed based on all available published papers.
| Version: |
0.1.3 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ape, dplyr, ggplot2, ggtree, magrittr, methods, patchwork, plyr, RColorBrewer, rlang, SnowballC, stats, stringr, tm, utils |
| Published: |
2023-02-20 |
| DOI: |
10.32614/CRAN.package.Sysrecon |
| Author: |
Shilin Ouyang [aut, cre],
Zihao Li [aut],
Jiamin Hu [aut],
Miyuan Cao [aut],
Feng Yu [aut],
Longfei Mao [aut],
RStudio [cph, fnd] |
| Maintainer: |
Shilin Ouyang <ouyangshilin at hnu.edu.cn> |
| License: |
GPL-3 |
| URL: |
https://oyshilin.github.io/sysrecon/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
Sysrecon results |
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