The inpath capability can be used to weave into binary class files contained in either a JAR or in an output folder.
To setup your AspectJ project to use the inpath:
When the AspectJ project is built, it will compile the aspects and weave them against the class files specified via inpath and produce a complete set of woven class files in the output directory of the AspectJ project.
Entries added to the aspectpath are also added to the project's Java build path.
The disadvantage of using this approach is that AJDT will not show how the advice in the aspects applies to the input classe. The Cross References view will show that the advice came from an injar aspect, but will not provide any more detail.