pastboon: Simulation of Parameterized Stochastic Boolean Networks

A Boolean network is a particular kind of discrete dynamical system where the variables are simple binary switches. Despite its simplicity, Boolean network modeling has been a successful method to describe the behavioral pattern of various phenomena. Applying stochastic noise to Boolean networks is a useful approach for representing the effects of various perturbing stimuli on complex systems. A number of methods have been developed to control noise effects on Boolean networks using parameters integrated into the update rules. This package provides functions to examine three such methods: Boolean network with perturbations (BNp), described by Trairatphisan et al. (2013) <doi:10.1186/1478-811X-11-46>, stochastic discrete dynamical systems (SDDS), proposed by Murrugarra et al. (2012) <doi:10.1186/1687-4153-2012-5>, and Boolean network with probabilistic edge weights (PEW), presented by Deritei et al. (2022) <doi:10.1371/journal.pcbi.1010536>. This package includes source code derived from the 'BoolNet' package, which is licensed under the Artistic License 2.0.

Version: 0.1.2
Depends: R (≥ 3.5.0)
Suggests: BoolNet
Published: 2024-08-22
DOI: 10.32614/CRAN.package.pastboon
Author: Mohammad Taheri-Ledari ORCID iD [aut, cre, cph], Kaveh Kavousi ORCID iD [ctb], Sayed-Amir Marashi ORCID iD [ctb], Authors of BoolNet [ctb] (Original authors of the BoolNet package), Troy D. Hanson [ctb] (Contributed uthash macros)
Maintainer: Mohammad Taheri-Ledari <mo.taheri at ut.ac.ir>
BugReports: https://github.com/taherimo/pastboon/issues
License: Artistic-2.0
NeedsCompilation: yes
CRAN checks: pastboon results

Documentation:

Reference manual: pastboon.pdf

Downloads:

Package source: pastboon_0.1.2.tar.gz
Windows binaries: r-devel: pastboon_0.1.2.zip, r-release: pastboon_0.1.2.zip, r-oldrel: pastboon_0.1.2.zip
macOS binaries: r-release (arm64): pastboon_0.1.2.tgz, r-oldrel (arm64): pastboon_0.1.2.tgz, r-release (x86_64): pastboon_0.1.2.tgz, r-oldrel (x86_64): pastboon_0.1.2.tgz
Old sources: pastboon archive

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