gsEasy 1.3
- Fixed bug, now ensuring absolute value of correlation parameter
r
is used to compute enrichment score (credit to Michael from Berkeley).
gsEasy 1.1
- Now includes GO term gene sets data object (i.e. a
list
of character
vectors, named by GO term, of genes associated with each term - can be loaded with data(GO_gene_sets)
[based on Gene Ontology (2015-11-27) and human GO annotations file validated on 07/08/2016]).
- Change in how
S
argument of gset
is interpreted when vector of scores r
is supplied - now instead of the scores for S
being those at the corresponding ranks in r
, they are those at corresponding indices. For example, in version 1.0 the scores for S=1:3
would be the top 3 scores in r
, however now it be the those of the first 3 elements of r
. Behaviour has not changed for when S
is character
or when N
is used instead of r
.