ggquickeda 0.3.2

• added to possible positions on where to put the N of observations in Mean and Median tabs: (fixed, mean, median)
• added check box to use geom_path: Check box for lines: Respect data order? (requested by Mark Sale, Certara)
• small fixes in the shiny app position_beewwarm and position_quasirandom removing groupOnX
• added arguments show.exptile_values, show.exptile_values_pos and show.exptile_values_order to ggkmrisktable() (requested by Mathilde Marchand, Certara)
• added argument km_linewidth to control km curves linewidths (requested by Sejung Hwang, UCSF)
  
• deprecated gglogisticexpdist() and ggcontinuousexpdist() in favor of ggresponseexpdist() with model_type =“logistic” vs “loess” vs “linear” vs “none”
• several ER functions bugs were fixed e.g. when exposure_distributionand exposure_metric_split where set to “none”
• several additional features to color by endpoint using fit_by_color_fill TRUE FALSE
• several arguments to better control distribution y position e.g. dist_scale, dist_position_scaler , dist_offset
• possibility to specify provide custom names for placebo and standard of care via exposure_metric_soc_name and exposure_metric_plac_value
• possibility to specify “boxplots” for the exposure_distribution argument in ggresponseexpdist
• possibility to specify “none”, “%”,“N (%)”,“N” for exposure_distribution_percent
• possibility to specify “none”,“left”,“right” for exposure_distribution_Ntotal
• separately control by dose and by exptile mean size mean_obs_bydose_text_size and mean_obs_byexptile_text_size
  
• separately control where to put the N by dose or by exptile using N_byexptile_ypos or N_bydose_ypos with options “with means”,“top”,“bottom”,“none”, text size is controlled by N_text_size
• added option to add N total by dose for lineranges via lineranges_Ntotal with options “none”,“left”,“right”
• possibility to return the plot and a list of all datasets needed to redo all layers from scratch via return_list
• give user more controls on legends when using ggresponseexpdist() with arguments: color_legend_title, fill_legend_title, linetype_legend_title, shape_legend_title, linetype_legend_title, and legend_order

ggquickeda 0.3.1

• rebuilt docs fixed broken link
• fixing some regressions introduced by bookmarking
• fixing some errors by the new R rules for logical comparison length with | versus ||
• fixing error in aspect.ratio not numeric (was also fixed in ggplot2)
• fixing other regressions with GGally::ggpairs() color and group
• added support of pasting values of two/three variables where it was just a placeholder
• added function ggkmrisktable() to add facetable risk tables, km and by ntiles split exposures
• added function gglogisticexpdist() and ggcontinuousexpdist() to add facetable logistic/linear regression with exposures split to ntiles with exposure distributions by dose/group and optional y axis projections
• added link to github pages in description thanks to @olivroy
• Fix part of ggplot2 3.4.0 deprecation warnings. (#27, @olivroy)

ggquickeda 0.3.0

• added options to drop levels for user discrete shape and linetype scales
• fixed GGally::ggpairs() group input and added ability to combine y variables
• fixed issue with barplot flip applied to bivariate plots
• fixed issues with barplot percent labels when position is fill
• added checkboxes to parse x and y axis labels text
• added ability to regenerate state of apps to have a better UX workflow in Phoenix (James Craig, #28)
• removed Welcome message and added padding
• James Craig added as a co-author

ggquickeda 0.2.2

• fixed bug in linear model equation where slope and intercept values were switched
• fixed bug where flip barplot was not working (auto flipped barplot already supported)
• added group aesthetic and other enhancements for pairs plot
• bug fixes for expansion, zooming with user input (plots with only x variable(s) or only y variable(s))
• restored target window annotations to work with factor/character x axis
• added the possibility to change the size and linetype of density plots
• added the possibility to choose the shape of boxplot outlier points
• added options for x and y scale tick formatting are now visible when pairs plot are active
• added options for identity line and for placement of custom/target text at plot edges
• added checkbox to recode numeric variables with -99 to missing
• removed ggstance dependency by adding needed positions to global.r
• fixed typos in Visualizing Summary Data vignette data labels

ggquickeda 0.2.1

• added a new method for factor reordering min/max difference
• added the mean +/- multiples of standard deviations summary using the mean_sdl function
• allowed to transform the label for mean and median to 10^ (useful when the x/y axis are logged)
• fixed a namespace bug with calling the scales package functions like muted or trans_xxx without the package being loaded, now using ::.
• fixed a bug with updateColourInput which is now only available from the colourpicker package
• reactivating the colorgradient widget after shinyjqui bug was updated and fixed
• added distiller continuous Blues and brewer discrete palettes
• added possibility to specify palette for viridis discrete and continuous with possibility to reverse the scale
• added more support for POSIXct variables where previously they were being treated as character
• automatic zoom slider is now working with POSIXct
• automatic Slider or User zoom now is controllable when facets scales are free
  
• discrete scale is no longer applied when the x and or y variable inherits from POSIXct
• modifying X/Y scale expansion is now optional (fixed auto expansion with free facets)

ggquickeda 0.2.0

• Added Violin plots
• Added options and fixes for histograms, barplots and densities
• Added options for Median/Mean/N labels (N digits, justification, edge positions.)
• Added points position_quasirandom and position_beeswarm
• Added multiple enhancements for theme control like panel.border, plot.tag.position and X and Y Axes Titles formatting
• Added multiple enhancements and options for ggpairs
• logticks and rug marks can now be on the outside of plot panel
• coordinates cartesian clip can now be set to off
• x/y axis percent and comma labels format now works for univariate plots
• x/y zoom now works when more than one x and/or y variables are selected
• long x/y discrete axes labels can now be wrapped to specified length
• UI updates and auto hiding for univariate plots, pairs, km
• Boxplots UI rework
• Readme updated
• summary level data vignette updated

ggquickeda 0.1.9

• Made errorbars for Median/PI and Mean/CI ignore mapped size
• fixed a bug when labels from Median/PI and Mean/CI and data are used
• table1 enhancements: na.is.category, render.missing, footnote and caption.
• table1 enhancements: added N missing and Sum to stats.
• added second field to order and recode variables after stacking e.g. for xvars and yvars
• added two new by variable factor sorting methods: ‘N Unique’ and ‘Sum’
• fixed a bug when custom reorder ignored the current order as starting point
• added ggplot tag field
• fixed a bug when user was selecting the same variables for x and y now stacking x and y is separate.
• fixed a bug in x axis label and barplots in some special cases
• updated UI or barplot and Density and ability to suppress label legend
• UI updates to only show the relevant options for pairs plot and histogram/barplot
• Automatic color theme switching to avoid not enough color or fill errors
• switched to github actions

ggquickeda 0.1.8

• Added possibility to use more than one x variable(s) and or no y variable(s)
• Added option for an explicit Missing Category with custom cuts
• Added option to compute the inverse of Numeric variables
• Moved the rounding to after division/inverse
• Added possibility to round data labels before plotting
• Added a blank shape type so we can do multiple y(s) when some layers do not have a point plotted.
• Added Docker configuration

ggquickeda 0.1.7

• Added support for semicolon separated files and added package version in App Title
• Added geom_rug support for x/y and for additional variable(s)
• Added geom_ribbon for mean/CI and geom_errorbar for median/PI (with UI updates)
• Enable dodge for mean/CI and median/PI to take into account the specified width
• Updated UI for facets options and added controls for bold, angle and justification
• Allowing specifying multi_line=TRUE for all facet labellers
• Added theme options for strip.switch.pad.grid and strip.switch.pad.wrap
• Added possibility to completely remove the facet strips background and outline
• Updated UI for legends options and added controls for legend/legend box, justification and margins
• Added control for legend.spacing.y
• Added continuous x/y scale(s) asymmetrical expansion values
• Added more position adjustments for points (e.g. dodge)
• Minor enhancements for correlation coefficients
• Updated UI for theme options
• Added support for the break.time.by argument for risk table, enhanced the K-M UI and added inputs for conf.type and conf.lower
• Fixed code generation issues by adding dependencies
• Bumped the minimum R version to 3.6.0 and the minimum ggplot version to 3.3.1
• Refreshed vignettes and readme screenshots

ggquickeda 0.1.6

• withheld gradientInput addition (shinyjqui issue)
• fixed a bug in risktable when nothing was selected
• added controls for plot margins
• added controls for legend margins
• strip.position for facet_wrap and more labeller options
• added parsed x and y axis titles
• custom position for legends and specification of legend and items background fill
• updated intro vignette

ggquickeda 0.1.5

• let ggpairs plots reflect custom color scales
• update the emax smoother to add e0
• apply a fix for the weight aesthetic for emax smoother
• update code to be compatible with breaking change from tidyr 1.0
• user defined shape and linetype scales
• user defined custom labels for custom x and y axes ticks
• user can divide by a constant not just a column

ggquickeda 0.1.4

• custom labels with text, label, text_repel and label_repel
• user can now add more custom colors up to 20
• added user control to specify mid color of continuous color scales
• added user control to specify strip text colour and more colourpicker background color
• order stacked data by sd of value
• added smooth emax model via nls and parameter values
• added parameter values for lm fit and made text size adjustable
• viridis and custom continuous color scale
• added possibility to divide multiple columns by a specified one (e.g. dose normalization)
• “Treat as Categories:” now accepts character variables in addition to numeric.
• “Treat as Numeric:” added to enable converting columns read as factors.
• updated the docs for geom and stat_km() stat_kmband() stat_kmticks().

ggquickeda 0.1.3

• UI and options improvements for KM (line sizes, transparency, ignore group and color), linetype mappping
• changed default error in stat_kmbands(), borrowed stairstepn from ggalt and applying zoo::na.locf() to deal with NA.
• added the possibility to add median survival with or without CI
• Using ggpubr::stat_cor() to compute correlations for more flexibility and margin in facets
• added ability to ignore grouping and or ignore color mapping for correlation coefficient
• added possibility to dodge means and medians
• added possibility to specify means and medians N and Values transparency and a default seed for text_repel
• geom text,label, with repel variants and position dodge for median and mean labels
• added transparency control for densities and histograms as well as linetype mappping
• added binwidth control for histogram (user defined or auto), and position dodge
• added window adjustment control for densities
• linetypes for predefined quantiles
• added the possibility to add one more therapeutic window and fixed a bug with categorical x axis
• added possibility to remove x/y axis tick labels
• fixes for continuous scales logic
• Added initial support for GGally::ggpairs()

ggquickeda 0.1.2

• bug fixed where in some cases plot data did not apply filtering
• updated and expanded merge multiple levels of a factor
• added mappings by shape for points and linetypes of lines and associated custom legends and possibility to ignore it
• added the possibility of choosing more linetypes for lines
• various UI improvements for points, lines, qr, smooth, median and mean
• added options to control size and transparency of qr, smooth, median and mean lines and added predefined qr 25 and 75%
• added options to force mean and median shapes
• fixed bug in median line not honoring transparency when Medianselected with some UI tweaks
• added more options for boxplot outliers (size and transparency)
• separate color control for major and minor gridlines with the possibility to remove them
• added annotation_logticks()
• make faceting less prone to fail when user mistakenly choose the same variable in rows and columns
• make user defined color/fill scales

ggquickeda 0.1.1

• added options to control facets strip background fill and placement
• added options to control panel spacing
• reworked barplots to be able to sort by frequency or reverse frequency
• histograms and densities gain more options and flexibility
• added possibility to reorder factors by length of of another variable
• added possibility to keep last row by id
• added more options to label x and y axes ticks e.g. using prettyNum()
• added styling options for horizontal and vertical reference lines
• added more methods for the correlation coefficient
• added p-values for slope(s) and adjusted Rsquare when a linear regression smoother is selected
• fixed a bug where x and or y axis zoom would not work in some situations
• added more stats from table1 as well as possibility to cut by quantiles eqcut()
• added possibility to merge multiple levels of a factor
• fixed bug where commas in label names broke up the factor levels when using “Recode/Reorder Categories”

ggquickeda 0.1.0

Initial CRAN release