epiflows: Predicting Disease Spread from Flow Data
Provides functions and classes designed to handle and visualise epidemiological flows between locations. Also contains a statistical method for predicting disease spread from flow data initially described in Dorigatti et al. (2017) <doi:10.2807/1560-7917.ES.2017.22.28.30572>. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
| Version: | 0.2.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | epicontacts, leaflet, ggmap, geosphere, ggplot2, tibble, sp, stats, htmltools, visNetwork |
| Suggests: | testthat, roxygen2, knitr, outbreaks, vdiffr, curl, rmarkdown |
| Published: | 2023-04-09 |
| DOI: | 10.32614/CRAN.package.epiflows |
| Author: | Pawel Piatkowski 
[aut, cre],
Paula Moraga
[aut],
Isobel Blake [ctb, dtc],
Thibaut Jombart [aut],
VP Nagraj [aut],
Zhian N. Kamvar
[aut],
Salla E. Toikkanen [aut] |
| Maintainer: | Pawel Piatkowski <pawel.piatkowski at posteo.net> |
| BugReports: | https://github.com/reconhub/epiflows/issues |
| License: | MIT + file LICENSE |
| URL: | https://www.repidemicsconsortium.org/epiflows/ |
| NeedsCompilation: | no |
| Citation: | epiflows citation info |
| Materials: | NEWS |
| In views: | Epidemiology |
| CRAN checks: | epiflows results [issues need fixing before 2025-11-15] |
Documentation:
| Reference manual: | epiflows.html , epiflows.pdf |
| Vignettes: |
01 Data Preparation (source, R code) 00 Overview (source, R code) |
Downloads:
| Package source: | epiflows_0.2.1.tar.gz |
| Windows binaries: | r-devel: epiflows_0.2.1.zip, r-release: epiflows_0.2.1.zip, r-oldrel: epiflows_0.2.1.zip |
| macOS binaries: | r-release (arm64): epiflows_0.2.1.tgz, r-oldrel (arm64): epiflows_0.2.1.tgz, r-release (x86_64): epiflows_0.2.1.tgz, r-oldrel (x86_64): epiflows_0.2.1.tgz |
| Old sources: | epiflows archive |
Linking:
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