Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.
| Version: | 1.2.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | data.table (≥ 1.12.8), stats, vcfR (≥ 1.12.0) |
| Suggests: | testthat |
| Published: | 2022-12-23 |
| DOI: | 10.32614/CRAN.package.GARCOM |
| Author: | Sanjeev Sariya [aut, cre, cph], Giuseppe Tosto [aut, cph] |
| Maintainer: | Sanjeev Sariya <sanjeevsariya at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Citation: | GARCOM citation info |
| Materials: | README NEWS |
| CRAN checks: | GARCOM results |
| Reference manual: | GARCOM.pdf |
| Package source: | GARCOM_1.2.2.tar.gz |
| Windows binaries: | r-devel: GARCOM_1.2.2.zip, r-release: GARCOM_1.2.2.zip, r-oldrel: GARCOM_1.2.2.zip |
| macOS binaries: | r-release (arm64): GARCOM_1.2.2.tgz, r-oldrel (arm64): GARCOM_1.2.2.tgz, r-release (x86_64): GARCOM_1.2.2.tgz, r-oldrel (x86_64): GARCOM_1.2.2.tgz |
| Old sources: | GARCOM archive |
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