CFAcoop: Colony Formation Assay: Taking into Account Cellular Cooperation

Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). <doi:10.1186/s13014-020-01697-y>) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.

Version:	1.0.0
Depends:	R (≥ 3.5.0)
Imports:	Hmisc
Suggests:	knitr, rmarkdown, testthat
Published:	2021-06-11
DOI:	10.32614/CRAN.package.CFAcoop
Author:	Daniel Samaga [cre, aut], Nikko Brix [aut], Kirsten Lauber [aut], Horst Zitzelsberger [aut]
Maintainer:	Daniel Samaga <daniel.samaga at helmholtz-muenchen.de>
BugReports:	https://github.com/ZytoHMGU/CFAcoop/issues
License:	GPL-3
URL:	https://github.com/ZytoHMGU/CFAcoop
NeedsCompilation:	no
CRAN checks:	CFAcoop results

Documentation:

Reference manual:	CFAcoop.html , CFAcoop.pdf
Vignettes:	CFAcoop (source, R code)

Downloads:

Package source:	CFAcoop_1.0.0.tar.gz
Windows binaries:	r-devel: CFAcoop_1.0.0.zip, r-release: CFAcoop_1.0.0.zip, r-oldrel: CFAcoop_1.0.0.zip
macOS binaries:	r-release (arm64): CFAcoop_1.0.0.tgz, r-oldrel (arm64): CFAcoop_1.0.0.tgz, r-release (x86_64): CFAcoop_1.0.0.tgz, r-oldrel (x86_64): CFAcoop_1.0.0.tgz
Old sources:	CFAcoop archive

Linking:

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