CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Version:	1.0.0
Depends:	R (≥ 3.6.0)
Imports:	VAM, Seurat (≥ 4.0.0), MASS, Matrix (≥ 1.3.3), utils, BiocManager, org.Hs.eg.db, org.Dr.eg.db, org.Mm.eg.db, AnnotationDbi, SeuratObject (≥ 4.0.0), methods, edgeR
Suggests:	sctransform (≥ 0.3.2)
Published:	2023-11-13
DOI:	10.32614/CRAN.package.CAMML
Author:	H. Robert Frost [aut], Courtney Schiebout [aut, cre]
Maintainer:	Courtney Schiebout <courtney.t.schiebout.gr at dartmouth.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright:	Dartmouth College
NeedsCompilation:	no
CRAN checks:	CAMML results

Documentation:

Reference manual:	CAMML.pdf
Vignettes:	CAMML_FigureVignette CAMMLQuick CAMML ChIMP

Downloads:

Package source:	CAMML_1.0.0.tar.gz
Windows binaries:	r-devel: CAMML_1.0.0.zip, r-release: CAMML_1.0.0.zip, r-oldrel: CAMML_1.0.0.zip
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): CAMML_1.0.0.tgz, r-release (x86_64): CAMML_1.0.0.tgz, r-oldrel (x86_64): not available
Old sources:	CAMML archive

Linking:

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