APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
| Version: | 1.3.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | assertthat, dplyr, ggforce, ggplot2, hash, lifecycle, magrittr, methods, Rcpp, rlang, Seurat, SeuratObject |
| LinkingTo: | Rcpp |
| Suggests: | cowplot, covr, knitr, rmarkdown, spelling, testthat (≥ 3.0.0), vdiffr, colorspace |
| Published: | 2025-08-18 |
| DOI: | 10.32614/CRAN.package.APackOfTheClones |
| Author: | Qile Yang  [cre,
aut, cph] |
| Maintainer: | Qile Yang <qile.yang at berkeley.edu> |
| BugReports: | https://github.com/Qile0317/APackOfTheClones/issues |
| License: | MIT + file LICENSE |
| URL: | https://qile0317.github.io/APackOfTheClones/, https://github.com/Qile0317/APackOfTheClones, https://joss.theoj.org/papers/10.21105/joss.06868 |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | APackOfTheClones citation info |
| CRAN checks: | APackOfTheClones results |
Documentation:
Downloads:
| Package source: | APackOfTheClones_1.3.0.tar.gz |
| Windows binaries: | r-devel: APackOfTheClones_1.3.0.zip, r-release: APackOfTheClones_1.3.0.zip, r-oldrel: APackOfTheClones_1.3.0.zip |
| macOS binaries: | r-release (arm64): APackOfTheClones_1.3.0.tgz, r-oldrel (arm64): APackOfTheClones_1.3.0.tgz, r-release (x86_64): APackOfTheClones_1.3.0.tgz, r-oldrel (x86_64): APackOfTheClones_1.3.0.tgz |
| Old sources: | APackOfTheClones archive |
Linking:
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