Last updated on 2026-06-08 09:51:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.32 | 29.30 | 50.98 | 80.28 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.32 | 19.56 | 34.34 | 53.90 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.32 | 46.00 | 78.14 | 124.14 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.32 | 57.00 | 79.26 | 136.26 | ERROR | |
| r-devel-windows-x86_64 | 0.32 | 63.00 | 86.00 | 149.00 | ERROR | |
| r-patched-linux-x86_64 | 0.32 | 25.35 | 47.65 | 73.00 | OK | |
| r-release-linux-x86_64 | 0.32 | 27.31 | 47.07 | 74.38 | OK | |
| r-release-macos-arm64 | 0.32 | 7.00 | 19.00 | 26.00 | OK | |
| r-release-macos-x86_64 | 0.32 | 19.00 | 74.00 | 93.00 | OK | |
| r-release-windows-x86_64 | 0.32 | 35.00 | 85.00 | 120.00 | OK | |
| r-oldrel-macos-arm64 | 0.32 | 5.00 | 13.00 | 18.00 | OK | |
| r-oldrel-macos-x86_64 | 0.32 | 18.00 | 49.00 | 67.00 | OK | |
| r-oldrel-windows-x86_64 | 0.32 | 42.00 | 102.00 | 144.00 | OK |
Version: 0.32
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("qtl2convert")
Loading required package: qtl2convert
Saving _problems/test-probs_qtl_to_qtl2-18.R
Saving _problems/test-probs_qtl_to_qtl2-40.R
Saving _problems/test-probs_qtl_to_qtl2-50.R
Saving _problems/test-probs_qtl_to_qtl2-61.R
Saving _problems/test-probs_qtl_to_qtl2-71.R
Saving _problems/test-probs_qtl_to_qtl2-82.R
Saving _problems/test-probs_qtl_to_qtl2-93.R
Saving _problems/test-probs_qtl_to_qtl2-104.R
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• this test only run locally (6): 'test-count_unique_geno.R:22:5',
'test-cross2_do_to_genail8.R:4:5', 'test-encode_geno.R:35:5',
'test-find_consensus_geno.R:17:5', 'test-find_unique_geno.R:26:5',
'test-probs_doqtl_to_qtl2.R:36:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-probs_qtl_to_qtl2.R:18:5'): probs_qtl_to_qtl2 works for backcross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "6": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:40:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:50:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:61:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:71:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:82:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:93:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:104:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.32
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("qtl2convert")
Loading required package: qtl2convert
Saving _problems/test-probs_qtl_to_qtl2-18.R
Saving _problems/test-probs_qtl_to_qtl2-40.R
Saving _problems/test-probs_qtl_to_qtl2-50.R
Saving _problems/test-probs_qtl_to_qtl2-61.R
Saving _problems/test-probs_qtl_to_qtl2-71.R
Saving _problems/test-probs_qtl_to_qtl2-82.R
Saving _problems/test-probs_qtl_to_qtl2-93.R
Saving _problems/test-probs_qtl_to_qtl2-104.R
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• this test only run locally (6): 'test-count_unique_geno.R:22:5',
'test-cross2_do_to_genail8.R:4:5', 'test-encode_geno.R:35:5',
'test-find_consensus_geno.R:17:5', 'test-find_unique_geno.R:26:5',
'test-probs_doqtl_to_qtl2.R:36:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-probs_qtl_to_qtl2.R:18:5'): probs_qtl_to_qtl2 works for backcross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "6": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:40:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:50:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:61:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:71:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:82:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:93:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:104:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.32
Check: PDF version of manual
Result: ERROR
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
cannot open file '/tmp/RtmpmZAph4/ltxf9572fe9b7fa/probs_qtl2_to_array.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.32
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("qtl2convert")
Loading required package: qtl2convert
Saving _problems/test-probs_qtl_to_qtl2-18.R
Saving _problems/test-probs_qtl_to_qtl2-40.R
Saving _problems/test-probs_qtl_to_qtl2-50.R
Saving _problems/test-probs_qtl_to_qtl2-61.R
Saving _problems/test-probs_qtl_to_qtl2-71.R
Saving _problems/test-probs_qtl_to_qtl2-82.R
Saving _problems/test-probs_qtl_to_qtl2-93.R
Saving _problems/test-probs_qtl_to_qtl2-104.R
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• this test only run locally (6): 'test-count_unique_geno.R:22:5',
'test-cross2_do_to_genail8.R:4:5', 'test-encode_geno.R:35:5',
'test-find_consensus_geno.R:17:5', 'test-find_unique_geno.R:26:5',
'test-probs_doqtl_to_qtl2.R:36:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-probs_qtl_to_qtl2.R:18:5'): probs_qtl_to_qtl2 works for backcross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "6": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:40:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:50:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:61:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:71:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:82:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:93:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:104:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.32
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("qtl2convert")
Loading required package: qtl2convert
Saving _problems/test-probs_qtl_to_qtl2-18.R
Saving _problems/test-probs_qtl_to_qtl2-40.R
Saving _problems/test-probs_qtl_to_qtl2-50.R
Saving _problems/test-probs_qtl_to_qtl2-61.R
Saving _problems/test-probs_qtl_to_qtl2-71.R
Saving _problems/test-probs_qtl_to_qtl2-82.R
Saving _problems/test-probs_qtl_to_qtl2-93.R
Saving _problems/test-probs_qtl_to_qtl2-104.R
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• this test only run locally (6): 'test-count_unique_geno.R:22:5',
'test-cross2_do_to_genail8.R:4:5', 'test-encode_geno.R:35:5',
'test-find_consensus_geno.R:17:5', 'test-find_unique_geno.R:26:5',
'test-probs_doqtl_to_qtl2.R:36:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-probs_qtl_to_qtl2.R:18:5'): probs_qtl_to_qtl2 works for backcross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "6": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:40:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:50:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:61:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:71:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:82:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:93:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
── Failure ('test-probs_qtl_to_qtl2.R:104:5'): probs_qtl_to_qtl2 works for intercross ──
Expected `result$probs` to equal `pr`.
Differences:
Component "1": Attributes: < Length mismatch: comparison on first 2 components >
Component "8": Attributes: < Length mismatch: comparison on first 2 components >
[ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64