Last updated on 2024-11-03 15:48:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.7 | 2.68 | 36.73 | 39.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.7 | 0.35 | 1.45 | 1.80 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.7 | 65.39 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.7 | 74.45 | OK | |||
| r-devel-windows-x86_64 | 0.2.7 | 4.00 | 81.00 | 85.00 | OK | |
| r-patched-linux-x86_64 | 0.2.7 | 3.82 | 34.90 | 38.72 | OK | |
| r-release-linux-x86_64 | 0.2.7 | 2.89 | 29.71 | 32.60 | ERROR | |
| r-release-macos-arm64 | 0.2.7 | 30.00 | OK | |||
| r-release-macos-x86_64 | 0.2.7 | 45.00 | OK | |||
| r-release-windows-x86_64 | 0.2.7 | 4.00 | 72.00 | 76.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.7 | 34.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.7 | 72.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.7 | 4.00 | 74.00 | 78.00 | OK |
Version: 0.2.7
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.7
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'rtdists', 'V8'
Flavor: r-release-linux-x86_64
Version: 0.2.7
Check: examples
Result: ERROR
Running examples in ‘pmwg-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pmwgs
> ### Title: Create a PMwG sampler and return the created object
> ### Aliases: pmwgs
>
> ### ** Examples
>
> # Specify the log likelihood function
> lba_loglike <- function(x, data) {
+ x <- exp(x)
+ if (any(data$rt < x["t0"])) {
+ return(-1e10)
+ }
+ # This is faster than "paste".
+ bs <- x["A"] + x[c("b1", "b2", "b3")][data$condition]
+
+ out <- rtdists::dLBA(
+ rt = data$rt, # nolint
+ response = data$stim,
+ A = x["A"],
+ b = bs,
+ t0 = x["t0"],
+ mean_v = x[c("v1", "v2")],
+ sd_v = c(1, 1),
+ distribution = "norm",
+ silent = TRUE
+ )
+ bad <- (out < 1e-10) | (!is.finite(out))
+ out[bad] <- 1e-10
+ out <- sum(log(out))
+ out
+ }
>
> # Specify parameter names and priors
> pars <- c("b1", "b2", "b3", "A", "v1", "v2", "t0")
> priors <- list(
+ theta_mu_mean = rep(0, length(pars)),
+ theta_mu_var = diag(rep(1, length(pars)))
+ )
>
> # Create the Particle Metropolis within Gibbs sampler object
> sampler <- pmwgs(
+ data = forstmann,
+ pars = pars,
+ ll_func = lba_loglike,
+ prior = priors
+ )
>
> sampler = init(sampler, particles=10)
MESSAGE: Sampling Initial values for random effects
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> sampler = run_stage(sampler, stage="burn", iter=10, particles=10)
MESSAGE: Epsilon has been set to 0.5 based on number of parameters
MESSAGE: mix has been set to c(0.5, 0.5, 0) based on the stage being run
Phase 1: Burn in
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|==================================== | 60% | New(100%)Error in loadNamespace(x) : there is no package called ‘rtdists’
Calls: run_stage ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.7
Check: HTML version of manual
Result: NOTE
Skipping checking math rendering: package 'V8' unavailable
Flavor: r-release-linux-x86_64