Last updated on 2025-12-04 02:50:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 24.90 | 506.92 | 531.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 19.23 | 377.62 | 396.85 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 53.00 | 763.66 | 816.66 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 49.00 | 759.71 | 808.71 | OK | |
| r-devel-windows-x86_64 | 0.7.0 | 28.00 | 461.00 | 489.00 | OK | |
| r-patched-linux-x86_64 | 0.7.0 | 26.07 | 480.58 | 506.65 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 24.75 | 477.56 | 502.31 | OK | |
| r-release-macos-arm64 | 0.7.0 | 7.00 | 168.00 | 175.00 | ERROR | |
| r-release-macos-x86_64 | 0.7.0 | 35.00 | 865.00 | 900.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 27.00 | 465.00 | 492.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | 8.00 | 142.00 | 150.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.7.0 | 42.00 | 988.00 | 1030.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 27.00 | 643.00 | 670.00 | OK |
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘test-asserts.R’ [4s/4s]
Running ‘test-charlson.R’ [6s/6s]
Running ‘test-comorbidities.R’ [1s/1s]
Running ‘test-data-frame-tools.R’ [1s/1s]
Running ‘test-elixhauser-example.R’ [1s/1s]
Running ‘test-elixhauser.R’ [1s/1s]
Running ‘test-icd_compact_to_full.R’ [1s/1s]
Running ‘test-internal-data.R’ [5s/5s]
Running ‘test-is_icd.R’ [10s/10s]
Running ‘test-locked-bindings.R’ [2s/2s]
Running ‘test-longitudinal-comorbidities.R’ [1s/1s]
Running ‘test-longitudinal-pccc-v3.1.R’ [1s/1s]
Running ‘test-lookup_icd_codes.R’ [5s/5s]
Running the tests in ‘tests/test-lookup_icd_codes.R’ failed.
Complete output:
> source('utilities.R')
> library(medicalcoder)
>
> # lookup exact vs regex consistency
> lx <- lookup_icd_codes(c("E11.9","I50.9"), regex = FALSE)
> lf <- lookup_icd_codes(factor(c("E11.9","I50.9")), regex = FALSE)
> lr <- lookup_icd_codes(c("^E11\\.9$","^I50\\.9$"), regex = TRUE)
> stopifnot(
+ identical(lx, lf),
+ all(lx$full_code %in% lr$full_code),
+ all(lr$full_code %in% lx$full_code)
+ )
>
> # the following gives an error:
> # Error in merge.data.frame(x = input, y = matches, all.x = TRUE, by = c(ifelse(regex, :
> # negative length vectors are not allowed
> m <- tryCatchError(lookup_icd_codes(x = "", regex = TRUE))
*** caught segfault ***
address 0x680008000, cause 'invalid permissions'
Traceback:
1: merge.data.frame(x = input, y = matches, all.x = TRUE, by = col_order[1:2])
2: merge(x = input, y = matches, all.x = TRUE, by = col_order[1:2])
3: lookup_icd_codes(x = "", regex = TRUE)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, ..., error = function(e) { e})
8: tryCatchError(lookup_icd_codes(x = "", regex = TRUE))
An irrecoverable exception occurred. R is aborting now ...
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64