Last updated on 2026-05-21 15:49:57 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 68.79 | 205.03 | 273.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 87.82 | 144.75 | 232.57 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 85.00 | 318.98 | 403.98 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 180.00 | 341.92 | 521.92 | OK | |
| r-devel-windows-x86_64 | 2.0.3 | 97.00 | 269.00 | 366.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 63.59 | 189.07 | 252.66 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 123.16 | 193.36 | 316.52 | OK | |
| r-release-macos-arm64 | 2.0.3 | 16.00 | 70.00 | 86.00 | OK | |
| r-release-macos-x86_64 | 2.0.3 | 44.00 | 229.00 | 273.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 98.00 | 222.00 | 320.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.3 | 44.00 | 183.00 | 227.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 109.00 | 288.00 | 397.00 | OK |
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/41s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.3
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
249exists, retrying for cluster 10 3.17674
244exists, retrying for cluster 34 2.71024
9exists, retrying for cluster 34 2.4704
147exists, retrying for cluster 43 2.73628
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang