Last updated on 2025-02-22 14:53:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 12.53 | 304.50 | 317.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 8.61 | 212.48 | 221.09 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 563.74 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 550.68 | OK | |||
| r-devel-macos-arm64 | 1.0.0 | 134.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.0 | 332.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 16.00 | 299.00 | 315.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 12.58 | 283.49 | 296.07 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 11.40 | 281.15 | 292.55 | OK | |
| r-release-macos-arm64 | 1.0.0 | 157.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 384.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 14.00 | 290.00 | 304.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.1 | 81.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 330.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 17.00 | 384.00 | 401.00 | OK |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘duckplyr-Ex.R’ failed
The error most likely occurred in:
> ### Name: read_file_duckdb
> ### Title: Read Parquet, CSV, and other files using DuckDB
> ### Aliases: read_file_duckdb read_parquet_duckdb read_csv_duckdb
> ### read_json_duckdb
>
> ### ** Examples
>
> # Create simple CSV file
> path <- tempfile("duckplyr_test_", fileext = ".csv")
> write.csv(data.frame(a = 1:3, b = letters[4:6]), path, row.names = FALSE)
>
> # Reading is immediate
> df <- read_csv_duckdb(path)
>
> # Names are always available
> names(df)
[1] "a" "b"
>
> # Materialization upon access is turned off by default
> try(print(df$a))
[1] 1 2 3
>
> # Materialize explicitly
> collect(df)$a
[1] 1 2 3
>
> # Automatic materialization with prudence = "lavish"
> df <- read_csv_duckdb(path, prudence = "lavish")
> df$a
[1] 1 2 3
>
> # Specify column types
> read_csv_duckdb(
+ path,
+ options = list(delim = ",", types = list(c("DOUBLE", "VARCHAR")))
+ )
# A duckplyr data frame: 2 variables
a b
<dbl> <chr>
1 1 d
2 2 e
3 3 f
>
> # Create and read a simple JSON file
> path <- tempfile("duckplyr_test_", fileext = ".json")
> writeLines('[{"a": 1, "b": "x"}, {"a": 2, "b": "y"}]', path)
>
> # Reading needs the json extension
> db_exec("INSTALL json")
> db_exec("LOAD json")
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: rapi_execute(stmt, arrow, integer64)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_execute(stmt, arrow, integer64), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_execute(res@stmt_lst$ref, res@arrow, res@connection@bigint == "integer64")
9: duckdb_execute(res)
10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11: .local(conn, statement, ...)
12: dbSendQuery(conn, statement, ...)
13: dbSendQuery(conn, statement, ...)
14: dbSendStatement(conn, statement, ...)
15: dbSendStatement(conn, statement, ...)
16: DBI::dbExecute(con, sql)
17: DBI::dbExecute(con, sql)
18: db_exec("LOAD json")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘developers.Rmd’ using rmarkdown
--- finished re-building ‘developers.Rmd’
--- re-building ‘extend.Rmd’ using rmarkdown
--- finished re-building ‘extend.Rmd’
--- re-building ‘fallback.Rmd’ using rmarkdown
--- finished re-building ‘fallback.Rmd’
--- re-building ‘large.Rmd’ using rmarkdown
Quitting from lines 168-170 [unnamed-chunk-10] (large.Rmd)
Error: processing vignette 'large.Rmd' failed with diagnostics:
rapi_execute: Failed to run query
Error: Invalid Input Error: Initialization function "httpfs_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.2.0/linux_amd64_gcc4/httpfs.duckdb_extension" threw an exception: "Attempted to dereference unique_ptr that is NULL!"
--- failed re-building ‘large.Rmd’
--- re-building ‘limits.Rmd’ using rmarkdown
--- finished re-building ‘limits.Rmd’
--- re-building ‘prudence.Rmd’ using rmarkdown
--- finished re-building ‘prudence.Rmd’
--- re-building ‘telemetry.Rmd’ using rmarkdown
--- finished re-building ‘telemetry.Rmd’
SUMMARY: processing the following file failed:
‘large.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang