Last updated on 2024-11-03 15:48:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 3.14 | 214.62 | 217.76 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 0.34 | 1.71 | 2.05 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 343.70 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 361.65 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.0 | 6.00 | 283.00 | 289.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.0 | 3.22 | 199.56 | 202.78 | NOTE | |
| r-release-linux-x86_64 | 1.0.0 | 2.84 | 149.58 | 152.42 | ERROR | |
| r-release-macos-arm64 | 1.0.0 | 145.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0.0 | 305.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.0 | 5.00 | 276.00 | 281.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.0 | 156.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 265.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 5.00 | 299.00 | 304.00 | OK |
Version: 1.0.0
Check: Rd files
Result: NOTE
checkRd: (-1) adapt.Rd:46: Lost braces
46 | \item{qvals}{a vector of values in [0, 1]U{Inf}. Q-values. See Details}
| ^
checkRd: (-1) corr_lfdr.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot_2d.Rd:40: Lost braces; missing escapes or markup?
40 | \code{plot_2d_lfdr} gives the contour plot of local FDR estimates when all p-values are equal to \code{targetp}. It is recommended to run \code{plot_2d_lfdr} for multiple \code{targetp}'s ranging from {0.001, 0.005, 0.01, 0.05}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.0.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘glmnet’
Flavor: r-release-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘adapt_demo.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14945 bytes
Input file size = 15815 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13320
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13315
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13315
Output IDAT size = 13315 bytes (1630 bytes decrease)
Output file size = 13393 bytes (2422 bytes = 15.31% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48330 bytes
Input file size = 48468 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35035
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35035
Output IDAT size = 35035 bytes (13295 bytes decrease)
Output file size = 35113 bytes (13355 bytes = 27.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26650 bytes
Input file size = 26764 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21618
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21618
Output IDAT size = 21618 bytes (5032 bytes decrease)
Output file size = 21696 bytes (5068 bytes = 18.94% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-14-1.png
672x336 pixels, 8 bits/pixel, 229 colors in palette
Input IDAT size = 4361 bytes
Input file size = 5138 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3414
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3413
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3413
Output IDAT size = 3413 bytes (948 bytes decrease)
Output file size = 4190 bytes (948 bytes = 18.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-15-1.png
576x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15931 bytes
Input file size = 16021 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12614
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12614
Output IDAT size = 12614 bytes (3317 bytes decrease)
Output file size = 12692 bytes (3329 bytes = 20.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-16-1.png
576x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15071 bytes
Input file size = 15161 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12511
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12511
Output IDAT size = 12511 bytes (2560 bytes decrease)
Output file size = 12589 bytes (2572 bytes = 16.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-16-2.png
576x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14953 bytes
Input file size = 15043 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12494
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12494
Output IDAT size = 12494 bytes (2459 bytes decrease)
Output file size = 12572 bytes (2471 bytes = 16.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-16-3.png
576x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14637 bytes
Input file size = 14727 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12285
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12285
Output IDAT size = 12285 bytes (2352 bytes decrease)
Output file size = 12363 bytes (2364 bytes = 16.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/adaptMT.Rcheck/vign_test/adaptMT/vignettes/adapt_demo_files/figure-html/unnamed-chunk-16-4.png
576x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14017 bytes
Input file size = 14107 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12047
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12047
Output IDAT size = 12047 bytes (1970 bytes decrease)
Output file size = 12125 bytes (1982 bytes = 14.05% decrease)
Quitting from lines 212-213 [unnamed-chunk-20] (adapt_demo.Rmd)
Error: processing vignette 'adapt_demo.Rmd' failed with diagnostics:
'glmnet' package is required for 'adapt_glmnet'. Please intall.
--- failed re-building ‘adapt_demo.Rmd’
SUMMARY: processing the following file failed:
‘adapt_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.0
Check: HTML version of manual
Result: NOTE
Skipping checking math rendering: package 'V8' unavailable
Flavor: r-release-linux-x86_64