Last updated on 2026-10-24 03:56:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 108.04 | 100.83 | 208.87 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 69.67 | 73.97 | 143.64 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 78.00 | 67.52 | 145.52 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 76.00 | 65.68 | 141.68 | OK | |
| r-devel-windows-x86_64 | 1.4 | 127.00 | 184.00 | 311.00 | OK | |
| r-patched-linux-x86_64 | 1.4 | 92.80 | 94.49 | 187.29 | OK | |
| r-release-linux-x86_64 | 1.4 | 90.10 | 89.72 | 179.82 | OK | |
| r-release-macos-arm64 | 1.4 | 20.00 | 12.00 | 32.00 | OK | |
| r-release-macos-x86_64 | 1.4 | 59.00 | 72.00 | 131.00 | OK | |
| r-release-windows-x86_64 | 1.4 | 123.00 | 113.00 | 236.00 | OK | |
| r-oldrel-macos-arm64 | 1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.4 | 52.00 | 55.00 | 107.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4 | 138.00 | 147.00 | 285.00 | OK |
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘VEwaningVariant-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: veWaningVariant
> ### Title: Estimation of Vaccine Efficacy Over Time - Variant Aware
> ### Aliases: veWaningVariant
>
> ### ** Examples
>
> ## Don't show:
> RcppArmadillo::armadillo_throttle_cores(2)
> ## End(Don't show)
> data(variantData)
>
> set.seed(1234)
>
> ind <- sample(1:nrow(variantData), 2000)
> # NOTE: This sample size is chosen for example only -- larger data sets
> # should be used.
>
> # no weighting -- variant 1 infection only
>
> res_noWgt <- veWaningVariant(data = variantData[ind,],
+ L = 52.0,
+ variant = 1L,
+ gFunc = 'piece',
+ v = c(5.0,10.0))
no models provided for weights -- weights = 1
verifying inputs
226 placebo participants refused vaccine after unblinding
676 placebo participants accepted vaccine after unblinding
1687 participants were censored
31 participants experienced variant 1 infection
42 participants experienced variant 2 infection
14 participants experienced variant 3 infection
only variant infections 1 included in analysis
< 10% (1/31) of infections occurred during the unblinded phase;
only the blinded phase is included in analysis
estimating theta
iteration:
1 2 3 4 5 6 7 8 9 10
11 12 13 14 15
>
> # censoring only weighting -- variant 1 infection only
>
> res_cens <- veWaningVariant(data = variantData[ind,],
+ L = 52.0,
+ variant = 1L,
+ modelCensor0 = ~ X1+X2,
+ modelCensor1 = ~ X1+X2,
+ gFunc = 'piece',
+ v = c(5.0,10.0))
weighting depends only on censoring dynamic
verifying inputs
226 placebo participants refused vaccine after unblinding
676 placebo participants accepted vaccine after unblinding
1687 participants were censored
31 participants experienced variant 1 infection
42 participants experienced variant 2 infection
14 participants experienced variant 3 infection
only variant infections 1 included in analysis
< 10% (1/31) of infections occurred during the unblinded phase;
only the blinded phase is included in analysis
performing regressions
censoring
Error in a$specials[[i]] : subscript out of bounds
Calls: veWaningVariant -> .fitCensor -> .censorFit
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc