8557d0014c3e0d10a99c488ca873e1cb *DESCRIPTION
ee8d9f91d76e60eb773deaf43cc88cb1 *NAMESPACE
ec28821a2291fe66dbd37b99c0d2ec11 *NEWS.md
4ba84265f1657662adca03fedfed7abe *R/Chapman_Kolmogorov.R
b0b142d142bd06ee1f9f1f920aa264d4 *R/EM_multinomial.R
83d48f26344960c3c2f69e0efbca21e3 *R/EM_poisson.R
7430db8c7b2c70e970d7d136bc129c3a *R/EM_solver.R
a33dd3df21f67b1c4c4f230c92017f89 *R/Estep_smooth.R
05d24c5d28d8ae26b5e591e24d470ed7 *R/Mstep_smooth.R
9f789a43f1e0c77875db2a7a266aac00 *R/RcppExports.R
383d9d50ef7a0f785e5a79ca06565595 *R/base_functions.R
cd31f88a19efc7e58c3b29eb930c319a *R/bbase.R
b9a17e1868b16938b30b1a3c40b4c243 *R/cdf_calculator.R
b12af8307887f6e15834a3bd2358a54b *R/crudeinit.R
280e5439010c1f63e695f474c551aa96 *R/direct_from_observed_intervals.R
7a095f08ff8b900a1aa35bf5d8594062 *R/estimate_support_msm.R
645bbcd3cd4b6ac38f9ee533d24b5463 *R/evalstep.R
44ba6a659600861424c76b9429ee1893 *R/get_trans_intervals.R
d91618de34b8f576b0a9fd82a70c400f *R/icmstate-package.R
b118132f91c538e2f35000549292aead *R/interpolate_npfit.R
8330893fed07b2bcd60d73fec8815bfc *R/msm_frydman.R
2c43ceab339077959ed119ce595e29ce *R/npmsm.R
ed16f089fe03bf3451486fa726273654 *R/plot_methods.R
d5fc566d487db38a45686682ed4d0224 *R/plot_probtrans.R
0175a1feebbcad9fe6ab743b216a1a70 *R/plot_surv.R
9c77c51aed2ec80787552574d8e52ba1 *R/predict_tp.R
58bcda99ddaf350076750ac0db607ed0 *R/print_methods.R
116acbfbcf2116aa30c5a3cddc0025d2 *R/probtrans_D.R
c0b213ee502ea9b2ac1235fa06441f83 *R/probtrans_coxph.R
c016d3fde5369ba370166ebefb05dd64 *R/probtrans_subj_methods.R
59b8e222d608f62ae361971ca79dc218 *R/probtrans_weib.R
f7f52af7e6f7123cdb8f3ca05a16c16b *R/remove_redundant_observations.R
38832688d56269ec7ad99a99333ad58c *R/sim1_weibmsm.R
96e997e8d0b138789b516db84cae6542 *R/sim_id_weib.R
95cd899b3d53547c209be7e192016e0e *R/sim_weibmsm.R
56758efb2a3fc79139dd2fd7bfb550ff *R/smoothmsm.R
b353f42db3f4edc9479120c4b8d7a3e5 *R/supportHudgens.R
81bc8b5832aa2786e6614d954f1dbd33 *R/support_from_direct_intervals.R
634c0d67413c5d4df7dd0eee289343d4 *R/support_frydman.R
2dd71f078fb57b375649c993bf7dd65a *R/support_npmsm.R
277f25426e58f5e760066eb2ca2dcb13 *R/tmat_from_msm.R
93dfb8cc3bed33a202f2db802c890cc4 *R/transprob_msm.R
26da8f9edd8b34ebe5fa119bd80c55a7 *R/transprob_npmsm.R
fe79b1941922fc8277e71c3a330191fe *R/visualise_data.R
abd9fd3d5c2dfad4768a864a65b1c77d *R/visualise_msm.R
0120f3c430506bc79b1f38140158d777 *README.md
cb3b20077bebc5da31fc1b46c657c0ff *build/partial.rdb
5a9798203cea0f4f422c5318f3a2f9ed *build/vignette.rds
fa8b01b1442427dca2df8e26fcd1bec1 *inst/doc/Overview.R
ad8b57cfd607408d185ae8c63f378967 *inst/doc/Overview.Rmd
be8526b7c2f4eeb0330c98d39e244ef4 *inst/doc/Overview.pdf
22d449468b6d2b6835b00730fc138519 *inst/doc/comparison-with-known-results.R
8ed9145f174685442c39db35ae69099d *inst/doc/comparison-with-known-results.Rmd
2eb6bbc7fd59c6005332224501ecb404 *inst/doc/comparison-with-known-results.pdf
17a6830ee4c554beecad16b73a90ef83 *inst/doc/sim_msm.R
3978c7fbaa668c591708d5f6062321fa *inst/doc/sim_msm.Rmd
a5cd858ac63c2b010fe3b1f32add02f1 *inst/doc/sim_msm.pdf
13185c681b2a9e707b45a8a45c18ca41 *man/Aintersectb.Rd
67767049532bbbfe7deec3cfef0f8882 *man/Alargerb.Rd
e900f0f7cc6af38cb6055fe4153b336a *man/AsubsetB.Rd
3f284592f83381f2a80bd3a1a052442c *man/ChapKolm_fwd_mat.Rd
5570e04360994f159d883ceda4e8df95 *man/ChapKolm_fwd_smooth.Rd
6e56a9ad14c39cb50ebc9269edc8fab4 *man/EM_multinomial.Rd
6df7e8670305c323c38a77e3924ecb88 *man/EM_poisson.Rd
951fa0357715b090d792b3bfb08774a3 *man/EM_solver.Rd
69261f3bbf0d103e5c8241b5780e1004 *man/Estep_smooth.Rd
9528e79ea67d8317fa322a70d5b53b66 *man/Mstep_smooth.Rd
1321e8acdb2e3faca764d19ff3d466f8 *man/ageqb.Rd
333b88af1fec2c584493889e7169334a *man/agreaterb.Rd
43a58921c842e71cec36b52a84b25eba *man/ainB.Rd
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8d95ce4d2ef379ff3246eb701ab14e0f *man/bbase_singletime.Rd
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b1935d76a35cd8f2f14dca27773302c9 *man/estimate_support_msm.Rd
8bff87ebe508579dea524154ecd4c614 *man/evalstep.Rd
f9de89db662fceb42f3b32210c02f425 *man/existenceNPMLE.Rd
418ff794dd0d0c38c20bbae50a80569b *man/expand_covariates_long_data.Rd
05335fd6201795d72ff60edd3dc82aac *man/extend_msfit.Rd
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01ed61a351af5bf465ac8ac206445dfb *man/get_trans_intervals.Rd
4bbdf8b506decf0b1335e4f9a85305f8 *man/graphfromIntervals.Rd
2ab7a9efe15c4e8ba8d03c19174604c3 *man/icmstate-package.Rd
e4662c74d9a1270abd7e9130938b70e2 *man/interpol_msfit.Rd
267185671b4f5d7d714a3f4c9515cd03 *man/msm_frydman.Rd
f81698f2b1cb21039a94d000c4817477 *man/npmsm.Rd
1d19808b738cffd5ab14041c58b15f16 *man/plot.npmsm.Rd
0c0e36b68a7379f5ac3b658f152168ac *man/plot.probtrans.subjects.Rd
fc68c7de13d3bf327e175024dc6a353e *man/plot.smoothmsm.Rd
47d538e6b715f118297b7ac75c603ea6 *man/plot_probtrans.Rd
3b0ea3001ca62f55ec16c8667a44f569 *man/plot_surv.Rd
336fc282b3dd00176496fa9d9ffe8e1b *man/predict_tp.Rd
61cff9a44349f54763ec2c01cdfdce36 *man/print.npmsm.Rd
f7a55cb50e378e226eb4e7077e53e395 *man/print.summary.probtrans.subjects.Rd
b419b71476265a8b222c65f3f2a5aa7a *man/probtrans_coxph.Rd
ed1d1d9a1fccf69fc1a3354c325172e7 *man/probtrans_weib.Rd
06124d057a125cc3be08c1e71295cb6d *man/prod_lambda_G_base.Rd
8371b17df23aaa126c0533d013eac563 *man/remove_redundant_observations.Rd
2982958a12bc8b6db07f32b15c7b21fd *man/sim_id_weib.Rd
853f81cbc6e392f3c226e792263e305a *man/sim_weibmsm.Rd
5e1c16fa04bd55c79deb047ed311998a *man/smoothmsm.Rd
478c14a1c2b44627663d7510ec7f61a8 *man/subject_specific_intensity_matrices.Rd
071f6e1d288c09d656d674d2fc1fa305 *man/subject_specific_intensity_matrix.Rd
2ebb785a914f02b7b49464843eb01568 *man/summary.probtrans.subjects.Rd
e3aa46366ea1b101708fe26726b7e7b3 *man/supportHudgens.Rd
29d99dd405f287fffda1bda70a08608e *man/support_from_direct_intervals.Rd
bf23b456c12691f78d169e3b63f1f30d *man/support_frydman.Rd
51f15b0739aa8b6bf3a1d47b5912adfe *man/support_npmsm.Rd
ee416e43ae32b64734021101de4760a3 *man/trans_specific_risks.Rd
0029d19129a68beed3c7bce185d368fe *man/transprob.Rd
6703308de5c5c25a9258cae51a843ed7 *man/visualise_data.Rd
eec069c2379cb006f523b5b0e518aa15 *man/visualise_msm.Rd
51837a57b3c4f765dbca03b73c4ab596 *src/RcppExports.cpp
692712325efe5bc12ec223dc790d7d83 *src/binary_search.cpp
34cc64f931e8ca26bd9b34a19a157d68 *tests/testthat.R
053b0a7caca00efcd6f7ecab6b7ffb59 *tests/testthat/Rplots.pdf
a3abd7309fc2aee8d334786a600849dd *tests/testthat/test-base_functions.R
47aa30a0b90f2622a8e59c046ff356a5 *tests/testthat/test-bbase.R
7e4dfaa06a202879493d9fb60310307e *tests/testthat/test-estimateSupportMSM.R
465aa2a03fbaee68c9494874fa29718e *tests/testthat/test-icmstate.R
5d2a6a5d93616981b2202695e3f2169a *tests/testthat/test-npmsm.R
5869ee2a1d90ccfcaba6d72bc0eb63c0 *tests/testthat/test-plot_probtrans.R
3f1b9ff04506120410f9bd0e3b680c3b *tests/testthat/test-probtrans_D.R
2d71d3a6cbd25fb990078fc39f26be4a *tests/testthat/test-probtrans_coxph.R
abb0d8d31308d6dc9fa295888198d280 *tests/testthat/test-profiling.R
dfd13760bf027ad89a2db8d67e79a0a9 *tests/testthat/test-remove_redundant_observations.R
dc9a748911b4cbe9b9c4f83af24e9178 *tests/testthat/test-sim1_weibmsm.R
0aca26d5c8b94277033ed28400b5a55c *tests/testthat/test-sim_id_weib.R
d868bbe8ff9ba64c9a27612a751bc96e *tests/testthat/test-supportHeinEM.R
9618e41fe676f4869daaf83905e50c5f *tests/testthat/test-supportHudgens.R
3fce46453a1f49b5bed870c6d17c83bb *tests/testthat/test-tmat_from_msm.R
6eb756af2cbfb1a3c0442253e35bd569 *tests/testthat/test-visualise_data.R
ffaa551988be6127510a5eee91399043 *tests/testthat/test-visualise_msm.R
ad8b57cfd607408d185ae8c63f378967 *vignettes/Overview.Rmd
8ed9145f174685442c39db35ae69099d *vignettes/comparison-with-known-results.Rmd
e2172ba4b877fe5aefcc177ce7acd515 *vignettes/references.bib
3978c7fbaa668c591708d5f6062321fa *vignettes/sim_msm.Rmd
