c25af83dfcced50db76cbf0099122111 *DESCRIPTION
55843c6b3360f97fb1531808146a1eb9 *NAMESPACE
04884eefa3d12c963e86f60bf2f4db5d *NEWS.md
6ecf42059c7d23e1550592e2ef67d188 *R/dataDoc.R
7cd00baacdf40c4b89933f619783f9b5 *R/dynrCook.R
d5c4f5bb8716569068d278e9c8910c2e *R/dynrData.R
40e50da319129ca794df55daa73bb472 *R/dynrFuncAddress.R
d7ec69a1109fd6a36952f8c836f36d5d *R/dynrGetDerivs.R
e007e4b87007406453a8a306c522ea7c *R/dynrMi.R
50b521cb866a7e40659c504f16b9e42c *R/dynrModel.R
f7686fe04176f896d2fa1ad25d034255 *R/dynrModelInternal.R
72841c25a6671a82da80b5934da53e05 *R/dynrPlot.R
9349be30163c2341eea146bef113626b *R/dynrPredict.R
3cecae356e4a02a067818e2b5a5078ff *R/dynrRecipe.R
c9f91c572df77b9b053e575a774477cd *R/dynrTaste.R
7db96304d47e0225667db590fab5fc0c *R/dynrVersion.R
9e89274b3417a5e16a20182f34f324cc *R/dynrVersion.R.in
c1d1f8cf2e9ef7a771248368411a94e9 *README.md
f291bd90dfa93c436e6f8cb3c86545cf *build/partial.rdb
9e1e84eedcd813fcd46c16cc72e71266 *build/vignette.rds
c3cded853a2388ad53569a7105d1c1e3 *cleanup
2a2f823b986ebabb8a524a946d960277 *configure
fddab13a57b42ae53f2c1c527a80b5da *configure.ac
d9271c569198af53d782e6a1c9dc2f7f *configure.win
3326f2f204426fb60e3e1d098bf2fdf3 *data/EMG.rda
ab95d9f3a4d25fd2b2d3c20fb979979c *data/EMGsim.rda
ba486b251f3d7d75bc678ddc8afe3da3 *data/LinearOsc.rda
9f4e022f9420359413af0c3f2bdf6979 *data/LogisticSetPointSDE.rda
10777e44a0caf8611c8dab9c403acbd6 *data/NonlinearDFAsim.rda
3325248e4f24fa37a0cf772b9779713c *data/Oscillator.rda
36dba3531a025334aff17aedcee17bd9 *data/Outliers.rda
5c56a3afebb0cfe3abf1315b0db18606 *data/PFAsim.rda
645e35e7fd82c8909b7c8b2caa461042 *data/PPsim.rda
165c1cea8ca5b524b07c1ea0098c99ba *data/RSPPsim.rda
bb58ab2bf53b6e5e655e4b114e0314c6 *data/TrueInit_Y14.rda
c3b156345bc19770c4b35c6b3cc20929 *data/VARsim.rda
1c5590390381eb141ebd8eac4417cab7 *data/oscData.rda
9e047591fb08b50e0ab7247f6acc7eae *data/vdpData.rda
5426b811d7fd104105891f889be9f3dc *demo/00Index
c7353fab6f366c94d6683a2997e485fc *demo/GetDerivs.R
3714df38870941de83103c753ed10d9d *demo/LinearSDE.R
7d3e93bef86824abe0200bf611e331cb *demo/MILinearDiscrete.R
4209e589e9bc59b0b5442de757709bd1 *demo/NonlinearODE.R
69c94d33690c14e55f6872d9608fb7b9 *demo/OscWithRand.R
f22e048bf881cdee456aa76aa9d14268 *demo/OutlierDetectionLinear.R
304eb5228ce8220dcc1b1c749727ec99 *demo/PFA.R
dafea7588424c969b8dc482d5a72dd75 *demo/RSLinearDiscrete.R
2d2ff12ff6020bacae8a44b98899d4ad *demo/RSLinearDiscreteYang.R
e46444852eb475525290e344ead94c99 *demo/RSNonlinearDiscrete.R
48b8b499215a381f59f2bba078fac68b *demo/RSNonlinearODE.R
2c5e1cafb7b8bec76d152bea9bdb9952 *demo/SDETVP.R
518e00d5644d5b79123b1aab9fb58fb2 *demo/VDPwithRand.R
4bfee1682f34790cdaee856c7282686b *demo/initialExo.R
2a7b336b4af235517480b9c8367f2a89 *inst/CITATION
0119cd1ec08962bb1fd7983651c51396 *inst/REFERENCES.bib
61f7c94ebaba9ba23fb31688b15e2ffd *inst/doc/InstallationForDevelopers.Rnw
d4d0e1fa7cac034d050c07f8e9536903 *inst/doc/InstallationForDevelopers.pdf
13b8ea09ca045033dd06ab19edc48a8e *inst/doc/InstallationForUsers.Rnw
ed883c66dce6d2f7ad1ee76ae65c1080 *inst/doc/InstallationForUsers.pdf
1d177158afb6a72a487bc0696b095e13 *inst/doc/LinearDiscreteTimeModels.R
65496768b600237a1516eecce95827a6 *inst/doc/LinearDiscreteTimeModels.Rnw
989d691ccc970193258766c0128f1b77 *inst/doc/LinearDiscreteTimeModels.pdf
a2257dd9882396fe67baa70a3b1f1b3e *inst/doc/NonlinearContinuousTimeModels.R
a24e44699978975c2fe3336f6b2f6c2f *inst/doc/NonlinearContinuousTimeModels.Rnw
bd3df1792bc9758ce03d4493c7837c19 *inst/doc/NonlinearContinuousTimeModels.pdf
3feb47c59724ff53fe6265dc3bdc6766 *inst/doc/linearSDE.R
1e1f7c1a0916a363bf331545af71e296 *inst/doc/linearSDE.Rmd
d0d7eb028b198210a20739b343bdcdf6 *inst/doc/linearSDE.html
0d0c458781fb6e7a21815e00cb342fb7 *inst/models/failing/RSNonlinearDiscrete.Rmd
7fb23e25e59b85c2b25497c58798e0bc *inst/models/failing/RSNonlineardiscrete.png
f7080f1e8051a2d002ac4382dfe0e13d *inst/models/passing/LinearSDEWithChecks.R
8bd60a391d64fe919b3476a9939981ea *inst/models/passing/errorCheckDyn.R
7ab45263d5540ba605983617bdb3c9fe *inst/models/passing/errorCheckInitial.R
4e3ef1333b1f35e0c6e7af47245a6513 *inst/models/passing/errorCheckMeas.R
2d2b1de2f9400796c78255fdbb512220 *inst/models/passing/errorCheckModel.R
e1412086424053534f9f24b6466a77e8 *inst/models/passing/errorCheckNoise.R
530ac60e3f49dbdbbd43b70c3d51b9f4 *inst/models/passing/errorCheckRegimes.R
fba15cfdb7cf13393f65f135469da8b8 *inst/models/passing/errorCheckSAEM.R
ae876de032883643065f31fcea652ceb *inst/models/passing/multiStart.R
5e40d1b589b376fe36deb8dda470ab53 *inst/models/slow/OutlierDetection.R
0f24891cb4ee4b5789d5334d2ad4cd0e *inst/models/slow/RSNonlinearODEFull.R
dd1fc3a562caed3f60ce87ca8ed0c1f1 *inst/models/slow/fern.R
54384f175702960fdcfb1b82edde8fce *inst/models/slow/vanderpol_symiin.R
7128bd88e19bbdf6716ca23ed8212285 *man/EMG.Rd
be892d2292286fa613bda0094cc75efb *man/EMGsim.Rd
4732a279fd0d8c340530ece712edae9c *man/ExpandRandomAsLVModel.Rd
509fc8dfb9a289ad975afab74d51da91 *man/LinearOsc.Rd
865539d7383fde09e040e6b6ca105d87 *man/LogisticSetPointSDE.Rd
59ce9eac2ceadf3fb4e84e170d87955d *man/NonlinearDFAsim.Rd
cfb29068cc2dec893b86a1089ec5102b *man/Oscillator.Rd
a1c8cdc7ac2be3a2fd9f3039329d3a73 *man/Outliers.Rd
2066262551d2dd32f27e9de45b8b98f5 *man/PFAsim.Rd
e96ed728f23889a77638299296fb6f38 *man/PPsim.Rd
1e7f28082ce28ed296b62dcf1e011ad4 *man/RSPPsim.Rd
3ba46f8beff9d16cf1f93acf69b92945 *man/TrueInit_Y14.Rd
3cae05568bcd2f904eaf69abffbde39e *man/VARsim.Rd
2c0f4352443187fcca2d73ba888d1c77 *man/autoplot.dynrTaste.Rd
1ed9d53ddd059255af37aa077c7f49d7 *man/coef.dynrCook.Rd
d1f54d0a07a384488a649b3a82d572c5 *man/confint.dynrCook.Rd
6ba0c2819f2ed59eb7aaf3d78afb36d2 *man/diag-character-method.Rd
9a3dcc0649fdc780c7e41f3da83976b9 *man/dynr-package.Rd
6fe101b398be3bab3cb15b8efd2a6f84 *man/dynr.config.Rd
0749c2a9cecbe0293a5846b14ff5c77b *man/dynr.cook.Rd
7d27dda08acceb135d2fa78285db4769 *man/dynr.data.Rd
48db5e3797e1cd1109c129f02aae868d *man/dynr.flowField.Rd
acf38c114f6d712c3716701f5ec3f197 *man/dynr.ggplot.Rd
7a7dd03137851fb870d0a623cec85033 *man/dynr.ldl.Rd
88359f72a610912aad607a96e3e8621b *man/dynr.mi.Rd
81b725f25b30f6f42bc764dcd4fe0839 *man/dynr.model.Rd
bd6ee2f5222692999fb9e0d05697cf00 *man/dynr.plotFreq.Rd
e3d336a4e0dbe47cb5c669175df6587a *man/dynr.taste.Rd
56ee839cf45159b55fb27abd4344677b *man/dynr.taste2.Rd
cc9f6383820e254351b10779eba2c46e *man/dynr.trajectory.Rd
a38a6e1ab2cb2f7e6feb5ae9f9c98802 *man/dynr.version.Rd
57e2f6cd1ff2c27d2e913e114e6655d2 *man/dynrCook-class.Rd
2654c1f840b270d51f8acbba772df262 *man/dynrDynamics-class.Rd
1d065135820d349695c7c619aa5d071b *man/dynrInitial-class.Rd
86fe316452d0857a26ceb958be43b78d *man/dynrMeasurement-class.Rd
1aa7925418f867769408c8652c00f8ae *man/dynrModel-class.Rd
025ad6198e7e4124ed187cf7db9ee792 *man/dynrNoise-class.Rd
69ca8085f4aacec4bc80fd52e80d16b8 *man/dynrRecipe-class.Rd
f4d6a514e8c2a31cc02cd642831f0036 *man/dynrRegimes-class.Rd
f7ad853c6571b101c236ebaad1e2a143 *man/dynrTrans-class.Rd
fa2c7377c305bdd17e9e21a224ad73b7 *man/getdx.Rd
f4f30eec39e8562e373d62d555d181d0 *man/internalModelPrep.Rd
bb0c38b9ef11757df090a1c267720575 *man/logLik.dynrCook.Rd
de42b0805c7b2ec735b9a544aa0eacd5 *man/names-dynrCook-method.Rd
1f7377173dfbf437326241ed632da415 *man/names-dynrModel-method.Rd
370230e0365ec81cc0ae9b0fbcd76381 *man/nobs.dynrCook.Rd
e5c70f53efe3c4199110ba646dfed0f5 *man/nobs.dynrModel.Rd
f7afd1be68fea7790f7a95c418b433ee *man/oscData.Rd
393ebf7d497accd985a0800e7cdf4660 *man/plot.dynrCook.Rd
0d2d5bf9fcfea9407a89030ac4633b9b *man/plotFormula.Rd
9e0b0938565a14734c46ef5b46a96861 *man/plotGCV.Rd
00fec6764c9fc8eb4fc40153fea11106 *man/predict.dynrModel.Rd
32979a5fb869286627da594d82784dbe *man/prep.formulaDynamics.Rd
31ada86e5b00c5322ba8aff389e3ad95 *man/prep.initial.Rd
f1c48a758859f5ace21658a1861bc75b *man/prep.loadings.Rd
c7037a03566b7947fc9fe80b44c5afcf *man/prep.matrixDynamics.Rd
44778472c663595fd7aa754815c24e36 *man/prep.measurement.Rd
f7a1c304b4cc7bee135de9de2c154059 *man/prep.noise.Rd
706665c562f2976774eecc3216acbe0c *man/prep.regimes.Rd
93aa4884fdfe525b5a76e04671a071dd *man/prep.tfun.Rd
caa9bff55825c3041ffa6b0e0be033c8 *man/printex.Rd
170fcd9e2c4b20fe5fd4584eb3807076 *man/summary.dynrCook.Rd
3d03aafd7b1cfd2070745ad6e44d3b6b *man/theta_plot.Rd
1d9a54b0afbf9af520b7325ea1a9aba0 *man/vcov.dynrCook.Rd
ba7509b67e7b5603d1ca72ac8764c9c6 *man/vdpData.Rd
27631498103b08980fc77fb027f309ae *src/Makevars.in
64a61c13677e2566bf2ed44b3a7c8297 *src/Makevars.ucrt
84a8983880cfb75bc64f83333c3523f1 *src/Makevars.win
b42f22147f21f9d80f8abdd69494041a *src/adaodesolver.c
6543793477514a2e3b0275b5d9062e66 *src/adaodesolver.h
0ad8c9fb50012f8fc4bcad0607a1bd46 *src/brekfis.c
ebbd540ab329994f4c4e4cadbae95ea8 *src/brekfis.h
a9e4cc632198523251c74d5b10deb7ac *src/data_structure.h
7ff8e0e77961fcb64c19fad638853773 *src/debug_onair.sh
c46261ee9047f43f539d7b42f888791b *src/debug_onmac.sh
868c23400a6e1deb0d9b145d9d223820 *src/ekf.c
86bd65498bcdc4f205842de224e9df8b *src/ekf.h
693f4247cc5b5bf3cbb75dff3373bbf6 *src/estimation.c
adba1a98518ce6bf2aea201e6d2e8b7d *src/estimation.h
e297183e5dc4ded04c4923feeff7dd32 *src/general.c
0e74123c0d141acfcc9a992e22beaa04 *src/glue.c
8b3a8d2db9e453938a41deaad1959b99 *src/mainR.c
2b67e7a8e5bdaf37e51cb1be8bfe96c4 *src/mainR.h
e298765c193b4dfb76c5ded0fed7274e *src/math_function.c
072c5e3a874e848449c08282bbd8910d *src/math_function.h
07ccadab8ac3ea528851bcbb72e1dc6d *src/model.c
f3591380e33317ca3d4301026106f51b *src/model.h
fc1d67946a060243ac0f0ac75bc4da2d *src/neldermead.h
e25679c7a87e663136e57afb758cf71e *src/nldrmd.c
9e86cbb316ce19709e725c44d14967f4 *src/nlopt-internal.h
8d98c37c446058f0624f6f1a67acc298 *src/nlopt-util.h
91d0ff50df4dbc6143841dbe82e6d2f3 *src/nlopt.h
c502f550ccf32a3cb39fe1ba4bbdcf8d *src/nlopt_config.h
bd8838e9ade88479d8617782ad158977 *src/numeric_derivatives.c
e0c0db2fc6ede996b9fd60e03ad3941b *src/numeric_derivatives.h
7e5e79a317d9f8205fceb01959e45e84 *src/optimize.c
f0c1696fc490aabdb6a1daa0a320716d *src/options.c
8cc67e53581b592ae88b54c04c0cb61a *src/print_function.c
c95fafa07328434ee45b9f5bfb42a8b5 *src/print_function.h
3024f7004ca6d187ab90896ac38127f9 *src/qsort_r.c
3d072b76b5ccd498b15a5c0d226a4edd *src/redblack.c
81b76c11f424164b6968086ea1a2e054 *src/redblack.h
973ec27866373b6d0337bef743f72f3a *src/runmainC_onair.sh
d65a8ace18e722b0f2c7647055cc6077 *src/runnlopt_onair.sh
8270bf070cb54b6c169e210510edb240 *src/runnlopt_onairwin.sh
7fcb98c63538e5e622decacb7deac1e4 *src/runnlopt_onmac.sh
88134ad513cf54078c7c98c85a87b69d *src/sbplx.c
05b1115a980db68bdb7908bc760640bb *src/slsqp.c
a8379ca1ec5419136e85c9e036c495e6 *src/slsqp.h
3b2d3d46365bc65911ac9abbf244c4ba *src/stop.c
215240051d84e95cb0cacca5e99ffe9c *src/timer.c
4879e1fc071874a37bd01c8d94d85f73 *src/wrappernegloglike.c
8cb1ab0ccb36159adf69b14e042c804a *src/wrappernegloglike.h
b5f93d62614db4a11ee1361736ce9fe5 *tools/buildNum.sh
8e3a4d81de6c366ef8025a01570a83d0 *tools/prep
efa1a6d7d916998d5131bce97f8a782b *tools/roxygenize
b4d57d694234f421c236f7994c3a878f *tools/testModels.R
496b857b2a383a0d9ad4ce839a231512 *vignettes/Figures/EnvVarExample.png
2655cacebe9c98a26de13085f78bb865 *vignettes/Figures/Example1FormulaEstimates.pdf
4c3769e62a1ec14b17cf9effea07e137 *vignettes/Figures/Example1FormulaNames.pdf
bcff8104731496b29a1bd8867995e50a *vignettes/Figures/NewplotEMG1Subj.pdf
bd442f891383b5eabbc5bd15f8c7a756 *vignettes/Figures/PathVarExample.png
5711aa5ebc2b97c79807b043120dfb86 *vignettes/Figures/PhasePortrait.pdf
1821b826293281752d1cf96e02061222 *vignettes/Figures/RDirExample.png
4dd54994675b9c187f63862328cf7144 *vignettes/Figures/RSNonlinearODEStyle2.pdf
54cdbef4308d7484fb691828cd339e2b *vignettes/Figures/RSNonlinearPlotformulaA.pdf
bd10417e5eefcb52a0184b99a64dfbb8 *vignettes/Figures/RSNonlinearPlotformulaB.pdf
afe7ea4b396a582fa1ac1e7bdf9dd1db *vignettes/Figures/plotRSGG.pdf
61f7c94ebaba9ba23fb31688b15e2ffd *vignettes/InstallationForDevelopers.Rnw
13b8ea09ca045033dd06ab19edc48a8e *vignettes/InstallationForUsers.Rnw
65496768b600237a1516eecce95827a6 *vignettes/LinearDiscreteTimeModels.Rnw
224975af9591dc35ab97e883a148189d *vignettes/LinearSDE.png
a24e44699978975c2fe3336f6b2f6c2f *vignettes/NonlinearContinuousTimeModels.Rnw
1e1f7c1a0916a363bf331545af71e296 *vignettes/linearSDE.Rmd
0ccb723382d477e961c7ae0545b07c97 *vignettes/ou-hunter-chow.bib
